Biomedical Text Mining — Now and Beyond

Panel discussion on user experiences with text mining


Hosted at the workshop on "Finding Hidden Knowledge: Text Mining for Biology and Medicine", this panel will compare specialists' and users' diverse experiences with biomedical text mining (TM), discuss the utility and usability of such technology, and pinpoint possible future directions for this fast-growing research field. As TM technology invites a range of applications, including processing the increasing volume of biomedical publications, the aim is to strengthen dialogue between its developers and its users. Such exchange and interaction is vital in order to facilitate the specification of use cases to drive the next generation of applications.

Panel Members

  • Wendy Bickmore
    Senior Scientist at the MRC Human Genetics Unit at the Western General Hospital in Edinburgh and user of TM to assist curation decision for the Nuclear Protein Database.
  • Ted Briscoe
    Professor of Computational Linguistics at the University of Cambridge and head of the highly interdisciplinary FlySlip project which integrated natural language processing (NLP) to support curation for Flybase, a database of drosophila genes and genomes.
  • Elizabeth Fairley
    Former Curation Manager for the TXM project at Cognia EU who benchmarked the usability of NLP for curation of information from biomedical papers.
  • Tim Miller
    Director R&D at Thomson Scientific, who will share his testimonial about TEMIS Text Analytics Solution.

Panel Chair

  • Bonnie Webber
    Professor of Intelligent Systems at Edinburgh University's School of Informatics, who has lead and been involved in numerous interdisciplinary research projects linking NLP and biology, medicine as well as the health sector.